networktype: undirected # directed | undirected edgetable: filetype: csv # optional, csv/tsv/xlsx/xls file: corr220c8.csv # .csv, .tsv, .xlsx/.xls sourcecolumn: source # name of source column (col1 if noheader is true) targetcolumn: target # name of target column (col2 if noheader is true) nodetable: # optional; nodes will be inferred from edge table if omitted file: TBDE-PE-detr.csv # .csv, .tsv, .xlsx/.xls idcolumn: Gene symbol # name of node id column outputfiles: drawing: corr220mod.svg # name of output file layout: neato # neato|dot|twopi|circle|fdp|sfdp|patchwork|dotfilename networkanalysis: false # set to true to generate a number of graph theoretical quantities nodegroups: # optional; define node groups using boolean queries PE: TBDEPEgene == 'YES' # node group name: boolean expression with node table column names graphattrs: outputorder: edgesfirst overlap: false nodestyles: # define node styles for node groups default: # optional; default style shape: circle fontname: Helvetica-Bold width: 1.0 fillcolor: type: discrete colexpr: TBDEModule map: M1 - brown: '#a52a2a' M2 - pink: '#ffc0cb' M3 - magenta: '#ff00ff' M4 - turquoise: '#40e0d0' M5 - blue: '#0000ff' M6 - green: '#00ff00' M7 - red: '#ff0000' M8 - yellow: '#ff0000' M9 - black: '#000000' style: filled fontcolor: type: discrete colexpr: TBDEModule map: M1 - brown: white M5 - blue: white M7 - red: white M9 - black: white penwidth: 1 PE: color: type: direct colexpr: PlacModulecolors penwidth: 30 width: 3 fontsize: 40.0